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Hello,
I tried to use BCalm on this [small_example.zip](https://github.com/GATB/bcalm/files/141100/small_example.zip) with k=41 and it did not work (for k=31, it works perfectly though). The BCalm st…
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Hi I'm getting an error during the validate phase running iMetamos:
```
initpipeline -W imetamos -1 UT-1_GTCCGC_L001_R1_001.fastq -2 UT-1_GTCCGC_L001_R2_001.fastq -d /Applications/metAMOS-1.5rc3/Pete…
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## Traversal
Clearly we need to traverse... I am going to implement the simplest idea soon (stick to the highest k we can, drop a level to resolve branching and tips).
Do we need frequency aware?
Do…
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Hi
I've been trying to run proovread using units instead of Illumina reads as follows:
_$ProovRead/proovread -l $subset -u $utg -t 16 -p pb-001_
However, I always got this error:
_bam2cns unexpect…
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After unitgs are created, the reads in the gkpStore are split into multiple files for direct loading by consensus. If unitgs are regenerated after this occurs, the old gkpStore partitioning is suppos…
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Hi Deanna:
I ran into an issue with this tonight when I tried to run it with one of the Assemblathon assemblies. Not quite sure what that error means, but it clearly didn't like one of the unitigs. …
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Hi all,
I tried to correct some Pacbio subreads using four datasets :
one Illumina SR, one Pacbio ccs and two Abyss assemblies (unitigs)
.. providing the first dataset with -s and the other ones each…
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Read files from:
http://www.ncbi.nlm.nih.gov/sra/SRX1433261%5Baccn%5D
Converted to fasta using `seqtk seq -A`.
```
$ cat SRR2917853_11.fasta SRR2917853_13.fasta SRR2917853_15.fasta SRR2917853_17.fas…
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E coli data from https://github.com/PacificBiosciences/DevNet/wiki/E.-coli-Bacterial-Assembly caused minasm to crash for me.
`wget https://s3.amazonaws.com/files.pacb.com/datasets/secondary-analysis/…
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Hi,
So I am trying to to assemble ONT reads that have been corrected with canu. But I am getting a strange error:
Laurens-MacBook-Pro:Ecoli_644 laurencowley$ ../git_repo/miniasm/miniasm -f source_canu…