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Hey, great package!
I am performing the differential analysis as described in your vignette on my own data. I'm presuming something is missing in my understanding of the outputs, but they are diffi…
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Sometimes it makes sense to begin indexing a sequence from its center. For example with hyper-variable loop regions for T cell / B cell receptors or peptides presented by antigen presenting cells. The…
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The MoA results from Lee (#15) are suggesting kinases as potential mammalian targets, and this may suggest reasons for the tox we're seeing. Some suggested targets are kinases (@danielgedder will summ…
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The following terms have no annotations; 1 has a InterPro mapping; 2 have UniRule & HAMAP mappings, see
https://github.com/geneontology/go-annotation/issues/5345
@balhoff Can you please obsolete t…
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Hi, I have a multiplexed 10x 5' gene expression run (5 samples hashed together) and the TCR/BCR reconstructed using TRUST4. In such a case, where there are multiple samples all within the same file, h…
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Starting to think about this in the context of generating a lot of 10x VDJ data... it seems we will want to (eventually) have a way for `Clone`s to contain `cell`s (see https://github.com/airr-communi…
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Each feature name should be informative but as brief as possible especially considering the display in the explorer.
EDT: Feature names need to be reworked for the next release of siibra-explorer
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The input command is:
tracer test -p 3 -c /home/temp/binaries/tracer-master/tracer.conf -o tracer_test
The error message is (in Trinity):
CMD: /home/temp/binaries/trinityrnaseq-Trinity-v2.5.1/u…
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Hello, I have run the TRUST4 based on our bulk RNAseq cohort (PE150bp, ribo-zero), where fastq is input, but the results are not consistent with other immune metrics (GEP based). I want to optimize th…
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Hi @CuzickA
~- [ ] 1. In my global figure I have Pamp -triggered immunity (PTI) 'annotated' as "FIRST DEFENSE"
However, when I look around I get the impression HR, hypersensitive cell death re…