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It would be nice to support Trix index (ixx) for the name index. Current generate-names.pl will create a lot of files which may cause problems in JBrowse transferring, downloading and storage.
UCS…
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Hi @dpryan79, various people e.g. @diekhans and @mrvollger have asked if there was a conda package to install all the kent tools. I don't know how to figure that out. Maybe there is already a meta-pac…
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The goal of this PR is to discuss the introduction of a new file type that replaces the `beddb` and `bed2ddb` formats. This file type will be able to store any type of data and be used as backing for …
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## **Describe the bug**
The pipeline stalls or ends prematurely before the IDR steps.
I have successfully run the pipeline on datasets using the mm10 genome, but it stalls when I use custom genomes…
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```
% ./bin/taffy view --region=Anc0refChr0:10-100 < tests/dupe_test.maf
#taf version:1 scoring:N/A
Segmentation fault (core dumped)
```
It would be useful to be able to select regions from …
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It would be good if desktop IGV could render features in a GFF file in specified colors depending on the feature type. It would also be good if a feature label could be directly visible on the featur…
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## Check Documentation
I have checked the following places for your error:
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core/nanoseq pipeline doc…
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Receied this error when loading a bigbed file. Surprises me as I was already able to load some other bigbed files.
Stacktrace says:
```
TypeError: Cannot read properties of undefined (reading 'ta…
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"bigRmsk" files will currently not work in IGV due to negative block starts. See issue #1130. The format is valid BED9, but we need the extra fields. Fix is to properly interpret the negative bloc…
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Hi,
the following things would be good to see on a hg38 track, to give people an idea how HPRC relates to the reference genome. The goal is that a genetics curator can see "does HPRC have anything …