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**Submitting author:** @ypriverol (Yasset Perez-Riverol)
**Repository:** https://github.com/PRIDE-Archive/pridepy
**Branch with paper.md** (empty if default branch): master
**Version:** v0.0.4
**Edito…
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Hi there,
I am trying to install cobratoolbox using the following command
"git clone --depth=1 https://github.com/opencobra/cobratoolbox.git cobratoolbox".
However, three folders, binary, papers…
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If you needed to add a task to the list below, please think about amending the issue template: https://github.com/FAIRplus/the-fair-cookbook/blob/migrating/.github/ISSUE_TEMPLATE/meta-checklist.md
Gr…
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In the tutorial: [https://opencobra.github.io/cobratoolbox/latest/tutorials/tutorialOptGene.html]
I first have an a problem with the `selectedGenelist` where the first cell is empty. I "resolved" t…
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Hi! I've met a bug when I am running testAll.
Something seems error in line 149 in testFVA.m, which is
assert(verifyCobraFunctionError('fluxVariability', 'outputArgCount', 2, ...
…
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https://github.com/opencobra/cobratoolbox/blob/c72a7bd511f79ebc1b6b1e0421544b22b4a9335d/src/reconstruction/rBioNet/neighborRxn2data.m#L44
This is unclear, since it loads up existing data, instead o…
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Hi!
I tried to run the `tutorial_atomicallyResolveReconstruction.mlx` tutorial on MATLAB online and I got the following error:
```
Error using readtable (line 498)
Unable to open file '/MATLA…
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Running examples for the `scrapenames` function returns an error. Have tried on multiple systems and networks.
Example below.
`library(taxize)`
`scrapenames('https://en.wikipedia.org/wiki/Spider'…
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defaultSboTerm is not defined in line 496 of writeSBML function. It should be set as defaultSboTerm = 176
**I hereby confirm that I have:**
- [ ] Tried to solve the issue on my own
- [ ] Retrie…
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## Artificial cell-cell communication as an emerging tool in synthetic biology applications
https://jbioleng.biomedcentral.com/articles/10.1186/s13036-015-0011-2
This article is a review on the di…