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I am getting the following error:
`Genome_genomeGenerate.cpp:217:genomeGenerate: exiting because of *OUTPUT FILE* error: could not create output file ./GenomeDir//chrName.txt`
SOLUTION: check that t…
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Hi! I am struggling to build a database. I'd like to resolve the following error.
```
/mnt/data1/centrifuge/indices$ make THREADS=8 p_compressed+h+v
Making: p_compressed+h+v: p_compressed+h+v
make…
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Hello,
I'm using the development version of SCENIC+.
When running the snakemake pipeline, it seems to get stuck on 'download_genome_annotations'...
Contents of my Snakemake folder:
-rw-r…
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As in title. E.g. `GCF_001721125.1` should be `GCF_001721125.1_ASM172112v1`.
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### Benefit
Streamlining yearly and mid-cycle updates from GOEO/UORG, enabling them to easily update photos and project status
### Acceptance Criteria
- [ ] implement skid in GCF
### Notes
https:…
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For the ideal result of all the command for handle django database:
addorganism : python manage.py addorganism Aethina tumida
addblast : python manage.py addblast Aethina tumida -t peptide pr…
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as of the merge of #160, charcoal now performs the following steps -
1. find candidate genomes for contamination analysis, based on sourmash shared hashes with GTDB r95
2. download genomes and per…
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Does anyone know what this error is?
Time reading reference sizes: 00:06:29
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
Referen…
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genomad end-to-end --cleanup --splits 8 '/home/wenluyin/GCF_009025895.1/ncbi_dataset/data/GCF_009025895.1/GCF_009025895.1_ASM902589v1_genomic.fna' genomad_output genomad_db
╭────────────────────────…
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I want to build a kraken database:
kraken2-build --standard --threads 24 --db krakendb
This line seems to work until this step:
Step1/2: performing rsync file transfer of requested files
T…