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Hello,
I'm having the following error when running genespace:
> out 8 unique places
...Carve_hap2: 2407 genes in 105 OGs hit > 8 unique places ***
NOTE! Genomes flagged *** have > 5% …
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This is a draft of how to fix it:
#check available updated database
query(ah,'org.Hs.eg.db.sqlite')
human_orgdb
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* **PTHR ID & PTN node:**
S. pombe has 8 amino acid transporter family members annotated to gamma-aminobutyric acid transmembrane transporter
which seems unlikely. (especially since by most metho…
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When I ran AnnotSV using Singularity, it runs into error `couldn't open "/usr/local/etc/AnnotSV/application.properties": no such file or directory`. I manually checked the container and the file `appl…
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Thank you for developing this software.
I am trying to run on my samples, but I keep getting this error
Any help will be appreciated
> cvn_SCC dense coercion: allocating vector of size 7.1 GiB
…
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When loading a hic file aligned to hg38, the gene track doesn't work.
Separately, when I try to load this file by URL as a 2D annotation track, it doesn't work. If I download the file and load it l…
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Hi Professor Ou:
I would like to ask whether I can concatenate EDTA library and Repbase library, then run RepeatMasker manually? I was glad to find EDTA can significantly reduce the percentage of u…
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Hi, I'm using annotatr and I've noticed in my annotation a transcript that is associated to the wrong gene.
It is ENST00000580062.5, which is listed (in the annotation) as a transcript for SNRPN (…
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Good day!
First of all, thanks for developing this great tool! exactly what I was looking for. I have tested it on my own data but have encountered some issues with some of the tools.
With tool…
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Hi there,
thanks so much for generating and sharing this tool!
I have been using ABIS on published RNAseq datasets and the transcript IDs for the TPM tables are the Ensembl Transcript stable ID ver…