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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
What are the collection types and names? Example:
- Glycine/max/annotations/Lee.gnm3.ann1.ZYY3
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I was trying to use [ANNOVAR](http://annovar.openbioinformatics.org/en/latest/) annotated VCF with the Slivar comphet script.
I got the following error:
>[noak@nodecn201 cohort_level]$ ~/resources/…
nroak updated
4 years ago
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At present the file I create allows exceptions for GO terms and for specific genes.
I would like to migrate the specific gene IDs to panther family IDs
So- in the "excluded gene" column in the n…
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
Haplotype 1:
- Chamaecrista/fasciculata/genomes/ISC494698.gnm1.8Q19
- Chamaecrista/fasciculata…
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**Is your feature request related to a problem? Please describe.**
The best practices for modelling sets of things in Biolink remains somewhat undefined or, at best, heterogeneously defined.
**…
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This past week I was using AmiGO to download annotation files. I see why this is happening, but I find it very annoying that the default download does NOT include the gene symbol.
I don't really ob…
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Dear all,
This issue compiles all the diseases from the unpublished USIDNET 2024 list for which MONDO codes have not yet been identified:
- The diseases listed below correspond to those marked in …
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We have a lot of model data relevant to the Illuminating the druggable genome project.
See: The human genome and drug discovery after a decade. Roads (still) not taken
http://arxiv.org/abs/1102.0448
a…
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Hello,
I am using wgd to examine ancient genome duplication in my focal group.
I ran wgd pre on two focal species to filter cds to those that would be accepted by wgd. All went well.
I then…
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hi, I run the WGD like that,format.SoyC09.CDS.fasta and ormat.SoyC09.gff are my input file :
```
wgd mcl -n 8 --cds --mcl -s format.SoyC09.CDS.fasta -o SoyC09.CDS.out
wgd ksd --n_threads 8 --pair…