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Hello,
I am the developer of MaSuRCA assembler. I am looking for a good long-read scaffolder and your paper had nice results. However, when I tried using your scaffolder on a human genome assembl…
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We often get asked this. Users have compared to reference using Mauve and know how the contigs are ordered. They would like to be able to do this in PATRIC without having to do the manual, tedious p…
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Hi,
I have created a reference transcriptome using Trinity /RNAseq assembler and tought I could use it as an input to STAR in order to map and count reads using STAR.
The first step would be --run…
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### Description of bug
Hi!
I'm a smidge baffled and can't find a solution online.
I'm trying to assemble five IonTorrent single read datasets. The read correction worked just fine and then when …
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Hi,
I wish to confirm that the LHE_COVERAGE parameter is the estimated coverage of long reads given to the assembler. Currently its description is difficult to interpret.
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Dear Xiao,
Thank you for your tool!
I managed to run the correction step with success, but when I tried to run the assemble step I got the following error.
Can you please help me?
Smartmat…
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Hello,
I am trying to use megahit as part of a larger analysis pipeline, and have encountered a strange behavior. I produced a test set using the following steps:
1. Extracted a 1M genomic sequence …
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Hi:
I ran MaSuRCA-3.3.4 with 3 Illumina paired-end samples successfully but fail with 4 samples. I used PSB to submit my task and failed at the first time. I thought it might be a coincidence, so I d…
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I have successfully installed and created conda environment for bactopia.
But "Bactopia datasets" is giving me error in downloading datasets
```
2024-10-19 21:04:29 INFO 2024-10-19 21:04:…
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## Input specifications
To skip the qc and assembly step we can provide the assemblies and reads used to generate the assemblies in a CSV file together with a CSV file specifying the reads.
The asse…