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I am trying to create evidence and msms.txt files for maxquant search
![image](https://github.com/MannLabs/alphapeptdeep/assets/21457/1a2b466f-4401-4260-bdab-671a0fa25825)
from a fasta file but…
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Currently, the UAT-WMDA-ATLAS-MATCHING-ALGORITHM-FUNCTIONS could not run the forced Data Refresh, because the function got restarted during the progress due to CPU spiking at 100%
You can see the pat…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
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**Title**
As a search coordinator I want to know whether a mismatch is an antigen or an allele mismatch. This is especially relevant for cord searches.
**Description**
In WMDA Search and Match w…
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Test failure reported by AN dev testing of #897
Matching results are being written out to multiple files, but the final `atlas-search-results` are not.
Preconditions:
set -ATLAS-REPEAT-SEARCH-FUNCTIO…
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Analysis of exercise 2 results from #964 shows some inexplicable ag mismatch discrepancies. On submitting the listed patient donor pair to AN DEV `ScoreBatch` function, the incorrect result is returne…
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I have multiple libraries that are technical replicates of each other, each containing a pool of the same 4 individuals. When I do downstream analysis, I combine them, but I'm assuming the assignments…
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This ticket is dependent on changes made as part of https://github.com/Anthony-Nolan/Atlas/issues/897.
Search orchestrator [downloads all matching results](https://github.com/Anthony-Nolan/Atlas/blob…
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Source data: https://pubmed.ncbi.nlm.nih.gov/27219013/
Exercise requires comparison of every possible patient and donor combination in order to generate match counts and antigen/allele match counts…
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### Installation Type
Docker
### pVACtools Version / Docker Image
4.0.0 - running via Singularity (v3.7.3)
### Python Version
_No response_
### Operating System
_No response_
### Describe the …