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I'm not sure if this is intended for some reason, or if people are depending on the inconsistent behavior, but the results returned by `Ltree.lca` don't agree with the postgresql function of the same …
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Hi,
In the first place, I have to thank for all the people who contibute to this amazing tool.
I am working on getting the set of LCAs from the HPO (Human Phenotype Ontology). An ontology struct…
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Hello,
I've run Centrifuge on my data, and it generated two output files: classification.txt and report.tsv. I then created a kreport.tsv file from the classification.txt file. However, I've notice…
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Hi @yoelcortes
I hope you're doing well! I'm working on performing LCA with BLocS for one of my dissertation projects, but I've run into a slight problem with the built in `system.get_net_impact()…
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In disucssion today it became clear we need to consolidate the tools to create topological maps.
@ibrahimhroob, I think you were involved in BACCHUS, where there was a little tool to "poop" topologi…
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### Description
I get an error like this:
```
Uncaught Error: Setting map 'renderingType' after instantiation is not supported.
```
It does not throw if only one of `renderingType` and `reuse…
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(Should this maybe be moved over to https://github.com/sourmash-bio/sourmash-examples/?)
So @bluegenes built an `LCA_SqliteDatabase` using:
```
sourmash lca index gtdb-rs207.taxonomy.with-stra…
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**Describe the bug**
Attempting to run `new-haddock` on any package that uses `build-type: Custom` will result in an error when:
* One uses GHC 7.10.3, 7.2.2, or 7.0.4. (I'm not sure why only thes…
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### Feature request
One can currently see the impact of different processes in the supply chain via a bar chart:
And via a Sankey graph:
Our client would like to have a more interactive…
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First, it doesn't pick up the k-mer size from the available signatures, so you have to specify it explicitly on the command line (unlike `sourmash index`, where you only need to specify -k if it's not…