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Same as the Slack message:
Dear ECA nodes, the Biodiversa+ call was launched https://www.biodiversa.org/1772 and is open for the submission of preproposals until November 30th. I briefly discussed ma…
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I'm trying to move my workflow from Qiime2 to R and I'd like to try to construct a heat tree using metacoder. However, I'm unsure about which output files I need from Qiime2. I can import whatever is …
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Hello Gert-Jan,
I am working on the same COI metabarcoding project mentioned before, but now encountering some issues with incorporating in-house generated barcodes. The in-house barcode database i…
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Redirecting mafft standard error to output directory gives an error: https://github.com/geraldinepascal/FROGS/blob/master/tools/tree/tree.py#L276
```
Fatal error: Exit code 1 ()
Traceback (most …
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Initial Request
Add the term "environmental: DNA" to the Examined_Detected code table to aid in the migration of legacy data.
_Proposed Value:
environmental: DNA - https://github.com/ArctosDB/arc…
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[Qiime 2](http://2.qiime.org/) now offers an interface for third-party plugins. The [plugin creation](https://docs.qiime2.org/2017.2/plugins/developing/) does not seem complicated: the plugin is a pyt…
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When trying to figure out how to document metabarcoding data, I came across some things that were not super clear to me.
Any insight in this question is much appreciated, and perhaps the terms could …
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Hi,
I recently learned for `taxa` and `taxize` and have been exploring them a bit today, as I am trying to merge microscopy data with an metabarcoding data so that I can compare what is observed by m…
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## Developing advanced R tutorials for genomic data analysis
If you use R for genomic data analysis, then this project might be for you. How much of your advanced R knowledge was earned through ser…
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Hello Benjamin,
I've merged sequence tables of several `dada()` runs (in summary around 680 samples) and I am running the `collapseNoMismatch()` right now and it takes quite a while (it's running f…