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0 hours vs 6 hours
[nema-edgeR-MA-plot full dataset.pdf](https://github.com/dib-lab/eel-pond/files/728129/nema-edgeR-MA-plot.full.dataset.pdf)
[nema-edgeR-MDS-full-dataset.pdf](https://github.com/di…
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In a recent msb-para review we found unresolved occurrence id references like:
```
1 found unresolved reference [National Museum of Natural History 77651]
1 found unresolved reference…
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So that older GAF files with the previous taxon ID 284812 go through the same screening as SCHPM 4896: N=Schizosaccharomyces pombe
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taxon as collection of organisms:
_A collection of organisms that has as members every organism of a taxon and no organisms of any other equal or higher ranked taxon. The taxon may be at any level.…
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I have ran into issues running the demo site on an VM as a demo for Smithsonian Inst.
I have changed the following parameters inside `/gh-ensembl-plugin/conf/ini-files/DEFAULTS.ini` to get around t…
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--Hi,
recently i have used gff3_to_gtf_converter.pl script (https://github.com/vipints/converters/blob/master/gfftools/codebase/gff3_to_gtf_converter.pl)
to convert gff3 file to gtf as: ./gff3_to_gtf…
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This seems very problematic that an exact duplicate mRNA line is not seen as a en error.
See attached.
[Duplicate_mRNA.txt](https://github.com/genometools/genometools/files/232485/Duplicate_mRNA.txt…
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Hi, I am looking into installing TEsorter into a custom shared python directory. I tried using:
python setup.py install --prefix=$(NEW_PATH)
and this created the following:
${NEW_PATH}/bin/* …
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Hello!
I did a synthetic genome to check the outputs and the conterminator failed to predict inserted contaminants.
**Infos:**
Version: 1.c74b5
Organisms in this synthetic genome: Saccharum hy…
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> Given a list of binomial names, how can I get accession ids and sequences?
```
For each database in ['plant', 'vertebrate', 'invertebrate] do
taxids = restez::list_db_ids() |>
restez::gb…