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Hi,
It seems like the website [omnipathdb.org](https://omnipathdb.org) is down. I'm following the [tutorials](https://liana-py.readthedocs.io/en/latest/notebooks/prior_knowledge.html) from LIANA a…
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Hi Saezlab,
Thanks for your precious work and for developing this tool!
Unfortunately when I follow this command:
`OmnipathR::collectri(organism=9606L, genesymbols=TRUE, loops=TRUE)`
I get th…
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Hello, I am following the Differential Expression Analysis for CCC & Downstream Signalling Networks Vignette. I have my anndata and df with dge results ready, but I can not run li.multi.df_to_lr, as i…
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Hi,
we met the problem when we ran code with our own adata:
AnnData object with n_obs × n_vars = 28374 × 25086
obs: 'cell_subtype', 'batch', 'n_genes_by_counts', 'total_counts', 'total_counts…
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I am encountering an issue when trying to use the get_collectri() function from the OmnipathR package to retrieve the CollecTRI network. The function is throwing errors and warnings, and it appears th…
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I feel like this is a known limitation but I was asked to open an issue to keep track of it.
With the retirement of the pt2pt component, some MPI operations on some fabrics are now run through the …
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Hello,
I'm currently having problem getting dorothea and progeny.
Here is example code and error message for get_progeny()
```
> net net sessionInfo()
R version 4.4.1 (2024-06-14)
Platform: …
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Hi,when I`m running example data on the Preprocessing transcriptomic library step, I encounter the problem.
![98adec7c81a075a584e7f534f283f83](https://github.com/user-attachments/assets/cd0b8f0a…
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Hello, I want to communicate with another machines and then use other machine GPU's.
I set up the openmpi with cuda. but I am running below code:
ompi_info --parsable --all | grep mpi_built_wit…
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## Environment data
VS Code version: 1.67.0
C# Extension version: v1.24.4
## Steps to reproduce
1. Create 'omnipath.json' in project's folder
`{
"msbuild": {
…