-
The Barcelona team mentioned that the redistribution routines uses for the mirror term might be better performed using the MPI_alltoall library functions, rather than the routines in redistribute.f90.…
-
Hello,
I'm currently having problem getting dorothea and progeny.
Here is example code and error message for get_progeny()
```
> net net sessionInfo()
R version 4.4.1 (2024-06-14)
Platform: …
-
I feel like this is a known limitation but I was asked to open an issue to keep track of it.
With the retirement of the pt2pt component, some MPI operations on some fabrics are now run through the …
-
Hi,
I am trying to get the TF enrichment using the command and get the error. Please help, thank you.
>library(decoupleR)
>library(OmnipathR)
> omnipath_cache_wipe()
[2024-10-07 19:14:03] [SUCC…
-
Hello, I want to communicate with another machines and then use other machine GPU's.
I set up the openmpi with cuda. but I am running below code:
ompi_info --parsable --all | grep mpi_built_wit…
-
There seem to be some bugs with the openmpi-4.1.4 when it is used with slurm 17.11.7 and intel Omni-path.
My CPUs are Intel Xeon E5-2695v4 (Broadwell Nodes with 15 GB /scratch).
When I use `srun --…
-
Hello!
I was following this tutorial (https://saezlab.github.io/decoupleR/articles/pw_bk.html) for pathway activity inference. I have mouse data, so I tried:
`net [2024-08-06 17:16:45] [SUCCESS] …
-
Hi there,
I get an error with get_progeny and setting organism = 'mouse':
net
-
Beginning with fio 3.31 Windows installers are available on GitHub at https://github.com/axboe/fio/releases can we support Windows OS ?
-
**Describe the bug**
I'm trying to get the MSigDB database for mouse. I tried both
```dc.get_resource("MSigDB", organism=10090)```
and
`dc.get_resource("MSigDB", organism='mouse')`
but they bot…