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This issue concerns the anophthalmia phenotype reported for 1700034E13Rik on the abnormal eye morphology page
https://nginx.mousephenotype-dev.org/data/phenotypes/MP:0002092
The supporting data link…
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A male patient with the following phrase - “mother was treated for trichomonas vaginitis during pregnancy” returns HP:0030683 for "Vaginitis". Can we adapt txt2hpo to identify/remove phenotypes from …
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Hello,
I'm using Regenie v3.2.9
I run the low variance plink fix after getting the error running Step 1:
`plink2 \
--bfile subjects_sex \
--chr 1-23 \
--mac 100 \
--write-snplist \
…
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Hi Cloufield team, it was a struggle for a GWAS newbie like me that finally went to the [SNP-Heritability estimation by GCTA-GREML section](https://cloufield.github.io/GWASTutorial/14_gcta_greml/). No…
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When I run this code in my own notebook,
http://nbviewer.jupyter.org/github/biolink/ontobio/blob/master/notebooks/Mouse_Gene_Phenotypes.ipynb
```
z, xlabels, ylabels = aset.similarity_matrix(dis…
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I thought I'd come up with a great solution to allowing Ortholog Phenotypes, showing a checkbox to include ortholog phenotypes as well.
Unfortunately, there's no way to get to the checkbox if th…
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https://github.com/pombase/fypo/issues/4275
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Dear all,
I log-transformed my phenotype (metabolite level) then I compared the GWAS results between the log-transformed only and the log-transformed and scaled (mean of 0 , sd of 1 ). There was a …
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Dear,
Thank you for the perfect software. It reported to me that failed reading phenotypes file when I used this software.
Traceback (most recent call last):
File "./permutation_testing.py", …
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In addition to the two existing cases (digenic and self-referential) that are flagged in the "review.tsv" file, another case of "somatic" is needed. These should be any entry that contain the word "so…