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Hi dougspeed,
Thanks for the hard work to develop this excellent genetic tool. I successfully run the procedure in my data but here I got a problem during the result interpretation after calculatin…
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We have species-neutral traits in OBA (all kingdoms) and TO (plant traits). OBA can be mapped to EFO, ATO, VT
What should the relationship be between OBA and upheno?
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## We have multiple _potential_ use cases for recording causal relationships between phenotypes:
* Defining phenotypes that specify aetiology - e.g. hemolytic anemia MP:0001585 DEF: deficiency of …
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we currently only import the "abnormal" phenotypes, but we also need to bring in the "normal" ones.
we also need to set up a general model for these kinds of statements.
@cmungall please comment on…
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we need to be able to use the EFO traits/phenotypes.
for example coming from measurements: http://www.ebi.ac.uk/efo/EFO_0004611
or 'abnormality of the cardiovascular system': http://www.ebi.ac.uk/efo…
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Hello,
I encountered an issue where Step 1 gives a warning that Firth fails to converge when running several phenotypes together. However, when I run each phenotype individually, the Firth estimate…
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Hi, RVTESTS allow "--covar-name cov1,cov2,cov3", but I found that I could not use "--pheno-name trait1,trait2,trait3". It gave me an ERROR : cannot locate phenotype header [trait1,trait2,trai3].
…
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Hi Florian, thank you for a great package! I think it would be very useful if `snp_simuPheno` could be extended to simulate multiple genetically correlated phenotypes. I guess the framework could be m…
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# 2024 phenotype data
## 2024 phenotype data
Scatter plot of Alkaloids vs Delta CT (both normalized and OG data).
![RplotAlkaloid_vs_DeltaCTadj_2024](https://github.com/DarrianTalamantes/Mappin…
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