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I have attached data from the latest 4 series that are updated:
* Emergence S01E05 - Updated 1 November 2019 15:17
* Treadstone S01E03 - Updated 1 November 2019 11:55
* Prodigal Son S01E06 - Upda…
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Hi Leighton,
I've encountered the above error when running find_differential_primers.py
It seems that one of my input sequences did not return any primers from eprimer3 giving an empty table a…
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This might not be an issue for feature tables from genbank, but for other sources (for example from prokka), a particular row may contain more than two lines. For example in the following it would be …
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Bug B occurs prodigally.
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Attached gameplay report - hopefully it will keep doing it...
[gameplay-report.zip](https://github.com/magarena/magarena/files/120672/gameplay-report.zip)
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I've performed a couple of runs using METABOLIC-C and I am not convinced that its run properly. I am not certain that the program runs as intended when testing it with "-test true" as a few key figure…
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I am very new to the nf-core. I have modified the base config to use more threads, but it does not seem that prodigal is actually using them. Any suggestions?
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Hello, I want to use padloc-2.0.0 with the fna option it works well but when I want to to use it with annotated proteins with the --faa and --gff options I have this issue ERROR >> 3 protein sequence…
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In Summary:
- Prodigal can now be run without the -c option (closed ends) allowing for partial gene prediction.
- Prodigal's gff output is now parsed with Bio::Tools:GFF, using the 'partial' tag of …
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Hi Vini,
I get the following error from DAS Tool:
Analyzing assembly
Skipping gene prediction
using protein fasta file: output/annotation/prodigal/cobinning/cobinning_proteins.faa
An…