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### Description of the bug
My students and I are having several issues with GEMmaker on our cluster. The most important and consistent issue is GEMMaker is running through the workflow VERY QUICKLY …
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## Check Documentation
I have checked the following places for your error:
- [x ] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/pangenome pipelin…
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### Description of the bug
(possibly related to #254 ?)
I ran into this error while testing the pipeline on a small server (VM):
```
N E X T F L O W ~ version 23.10.1
Launching `https://g…
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Make the QBIC upload webservice submit the actual upload job to SGE.
ToDos:
- [x] create SGE queue
- [x] submit to SGE
- [x] show submitted/running jobs with status
- [x] ionice file stuff
- […
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### Description of the bug
[issue in downloading](docker: failed to register layer: rename /docker/image/overlay2/layerdb/tmp/write-set-2818107168 /docker/image/overlay2/layerdb/sha256/968f331861f0…
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when trying to run the [easi-fish tutorial](url), I ran into a runtime error in `easifish_registration_pipeline` ([application_pipelines.py:230](https://github.com/GFleishman/bigstream/blob/master/big…
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### Description of the bug
I used salmon output and provided genome annotation via `--gtf`. Most genes did not have a `gene_name` entry in the gtf, but all had a `gene_id`. All genes that were DE b…
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### Description of the bug
I am trying to run `nf-core/smrnaseq` pipeline. I get the following error:
ERROR ~ Error executing process > 'NFCORE_SMRNASEQ:SMRNASEQ:MIRTRACE:MIRTRACE_RUN (1)'
…
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for download all data of project under readme it says
~$ java -jar postman.jar -u "*"
should be
~$ java -jar postman.jar download -u "*"
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Hi,
several customers asked me, why the QBiC barcodes are not attached to the labels anymore, once the files have been downloaded.
Customers would like to keep the barcodes attached to the file na…