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Hi,
I have reported this bug at www.repeatmasker.org, but was hoping to get some input from here as well. Sorry if this is therefore a duplicate.
My issue:
LTRHarvest was running on a single co…
CIWa updated
8 months ago
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Hi,
We have dozens of plant HiFi assemblies of inbreeding line, my previous test work on pggb for parameters tuning. I noticed the newest version of cactus including updates of pangenome pipeline.…
baozg updated
2 years ago
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Hi, i was testing cactus on 4 gpus 64 cores single machine. After cactus finished on the example dataset, I checked the log and found that only segalign_repeatmasker was called. There was no segalign …
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commond : RepeatModeler -pa 32 -database HWDY -engine ncbi > repeatmodeler.log
RepeatClassifier Version 2.0.2 …
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**Describe the issue**
I run RepeatModeler with LTR_retriver occured an error. I want rerun it. However, even I delete all files of round-6, it still can not run with the parameter of -recoverDir.
…
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Hello,
I have a hybrid plant genome with two haplotypes (Hap#1=1.6Gb with 22 chromosomes and Hap#2=1.8Gb with 24 chromosomes). I wanted to mask the genome, but RepeatMasker seems to be stalling in…
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Hi,
We wanted to try xTea on a plant species. Is that possible or does it require a human reference?
Agnieszka
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I run the RepeatModeler without parameter "-LTRStruct" . And this is my input:
RepeatModeler -engine ncbi -pa 24 -database vicia_unijuga_db
And two days later, some error occured when running LTR…
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Hello!
I was wondering if there is a way to use SQuIRE Fetch to obtain the reference data from the T2T human genome annotation as, so far I have only be able to obtain the FASTA file ([hs1.fa.gz](h…
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**Describe the issue**
I'm not sure if these are a singular problem or a series of problems. FWIW, I'm doing this on SLURM.
1. LtrPipeline: GenomeTools failed to run ltrharvest. Error code: 65536
…