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Hi @LuyiTian ,
Could you please comment on my error below?
Running code:
```
for i in test; do /FLAMES/python/sc_long_pipeline.py --gff3 hg38v99.Cellranger.genes.gtf --infq $i.demultiplexed.fq.g…
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Hi,
Thank you for this awesome program. I have two questions about running it:
_Question 1_
1) In what folder should I open the "BQ" python environment? I currently have two folders relevant to t…
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Hello,
I am attempting to run compute_lineage_drivers(), but no matter what value I set for "lineages" I keep getting a value error.:
```
File "", line 421, in combined_kernel_analysis
File …
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I de-convoluted 12 bulk RNA seq samples of brains from mice subjected to stroke. Each brain was separated into two hemispheres (Ipsilateral where ischemia took place and we expect neuronal death and …
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Hi
Thanks for your software I do not know why I am not able to merge my metadata
I should mention that my two Bulk samples are output of `micxr` and my two sc(single cell) samples are output of …
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## Please use the template below to post a question to https://discourse.scverse.org/c/ecosytem/cell2location/.
### Cell abundance vs cell proportion for calculating spatial maps
I am working …
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Hi,
Is it possible to run gpsFISH without spatial count and spatial cluster datasets (or can it run with spatial count and cluster datasets provided in the tutorial)? I am working with the datasets…
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Cell by bin
Visualize in higlass
Cell by peaks (in BED + snap files)
Annotated peaks (genomic intervals) per cell
Genome-wide (not necessarily tied to a gene)
Our Pipelines:
- [ ] We need to cre…
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Dear CelliD developers,
I am using CelliD to analyze my own scRNA-seq data from 10X genomics. When running the 'RunCellHGT', I encountered the following errors:
Error in rep(seq(length(PathwayMa…
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Morning 1: Spreadsheets & intro to R
# Good:
## Content:
* Introduction for using function building and using vector
* examples to explain functions
* I always used length() to find out how man…