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Hi everybody,
the idea is to have a suite of tools able to carry out quality filtering, assembling, clustering and ORF finding on metagenomic sequences. This would be really useful to generate (sam…
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hello,I am trying to use this software to assemble the chloroplast genome, and the result shows INVALID SEED, PLEASE TRY AGAIN WITH A NEW ONE. I want to know where mistake happened, DoIyou have any s…
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Hi There,
I get the following ValueError when running VirSorter2 pipeline.
```
cat /home/sej/VirSorter2/all_unknown.out/log/iter-0/step3-classify/provirus-score-ssDNA.log
Traceback (most rec…
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I believe there is something wrong with the `abPOA `conda installer as the installed version breaks even with the test data (seq.fa).
```
conda create -n abpoa_env -c bioconda abpoa -y
conda acti…
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I'm preparing to analyze shotgun genomic data for paralogs of functional genes using aTRAM 2.0 (automated target restricted assembly method). This program assembles genes from WGS reads, using a BLAST…
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**Is your feature request related to a problem? Please describe.**
No.
**Describe the solution you'd like**
Currently, the `bin-contigs-metabat` action performs binning in a per-sample fashion. It wo…
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Hi there,
I am curious whether PlaScope can work based on sequences assembled by other software, such as soapdenovo, unicycler? Or just can work based on SPAdes ?
**And also,** can PlaScope work b…
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Currently they are a byte sequence. Should be an assembly sources, preferably compilable by rasm2.
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Hi
I am trying to use the metamos software to analyse some pacbio data. When I try to run the pipeline I get this message:
Starting Task = preprocess.PREPROCESS
**\* metAMOS: Error: cannot correc…
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It would be nice with some simple examples on how to generate the most basic input data: assembly + coverage
## Estimate the amount of data you need
(100%/target_abundance%) * average_genomesize *…