-
I used sequencing data to align with Bowtie2 to the GTDB database, and then I used the gtdb_to_taxdump.py and acc2gtdb_tax.py scripts to generate name, nodes, and acc2tax files. However, I encountered…
-
Dear developers,
Many thanks for such a great tool!
I have 32 fastq files sequenced from direct cDNA sequencing by nanopore, and compressed them into a fastq.gz file.
When running the rattle cluste…
-
Hi,
I have successfully used DISCOVER with data from whole-exome sequencing. I am wondering whether I can use it with data from targeted sequencing data generated by MSK IMPACT or DFCI OncoPanel. A…
jud-b updated
6 months ago
-
**Describe the bug**
Dear bamtocov team,
I have human WES data and am trying to run bamtocov. After 6 hours, not even half is done/calculated, even when using 24 threads. Maybe I am missing somet…
-
### Description
For human DNA samples customers can order different analysis workflow but they can also order sequencing only (FASTQ) where we just send them the FASTQ files.
This option does not …
-
Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
-
Hello,
Thanks very much for this tool! Are you planning to add a model for R10 cDNA any time soon? I suspect that it would get a lot of use.
Thanks,
John
-
We got back 150 bp read data from NovoGene from the SATAY experiments. Based on a manual inspection of the data, we see that:
- Each read also contains the sequence of the primers used for amplific…
-
As a GSU PM (YL) I would like to verify the manually compiled QC data of plates from a supplier is consistent with the data already processed in Sangers systems so that we can select samples with good…
-
Hi,
I have Nanopore sequencing data for the 16s gene of microbioal communities. Can dada2 be used for this type of sequencing data, and if not, is it in development? Thanks!
Best wishes,
Carla …