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Hello,
There seems to be an error at the fastq-fasta conversion, or fastq filtering step. Can you provide advice based on the error message below? I have 180 fastq samples and it seems to proceed t…
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phs001457.v1.p1 - The immune cell landscape in kidneys of patients with lupus nephritis
### Project short name:
Hacohen-Human-CELseq2
### Primary Wrangler:
Arsenios
### Secondary Wrangler:
Anu
#…
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**Describe the bug**
UMI-Tools does not remove all duplicate reads. This can be verified by running UMI-Tools on it's own output, which removes additional reads.
**To Reproduce**
Take any bam fil…
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One of the changes in modeling in berkeley was to support projects that were had multiple instrument runs (of the same type) which should be analyzed together. Records are linked with part_of, for the…
aclum updated
1 month ago
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### Discussed in https://github.com/milaboratory/mixcr/discussions/1681
Originally posted by **Euchiz** May 31, 2024
Hi everyone,
I am currently working with single-cell Oxford Nanopore RNA…
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### Project short name:
smokingAirwayEpithelium
### Primary Wrangler:
Ida
### Secondary Wrangler:
Ami
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1glL0s_L…
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### Context
We are encountering a new issue with resurveying requested experiments on the staging environment.
First we queued a large batch of requested experiments. These failed with miscellan…
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10x has new versions for the following assays. There should be updated terms for these assays
## Preferred term label
10x 3' v4
10x 5' v3
## Synonyms
10x 3' v4: 10x 3' v4 sequencing, 10X 3' v…
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…