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Currently, `RevIndex` only supports a single `Collection` for use as external storage. This limits it to things like Zip files and .sig.gz files, and maybe manifests and pathlists of .sig.gz files.
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Extending https://github.com/sourmash-bio/sourmash/issues/1750, I am copying a conversation between @ctb and @drtamermansour to be detailed later into tasks.
Slack Conversation
Tamer Mansour…
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how to run the tests right: https://github.com/sourmash-bio/sourmash/pull/3138#issuecomment-2104746508
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Transferred issue from genome-to-json, original openend by AgressiveHayBale:
The "Warning, less than 50 percent could be taxonomically assigned to analysed genome" message is unclear when Sourmash pr…
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As I was thinking about the ANI stuff #1967 https://github.com/sourmash-bio/sourmash/issues/2001 I came up with an idea. 💡
right now, search outputs largely useless CSV files, with minimal informat…
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I implemented new sourmash multiqc modules. I would like these to be integrated into the seqqc pipeline now, but I'm guessing there will be substantial lag time between
1) PRs being merged into mult…
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Mysteries of kmers: k=21 has divergent pattern from k=31 of the same species.
Using trim-low-abund did not make the pattern disappear, as long as everything ran right. It actually make the values …
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I know this is being used in `mastiff_manygather`, but I expected it to be used when I did the `fastmultigather` on sigs.
https://github.com/sourmash-bio/sourmash_plugin_branchwater/blob/43caeba683…
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ref discussion in: https://github.com/dib-lab/khmer/issues/1927
hi folks,
I'm afraid we aren't able to maintain khmer at all moving forward - it's basically been in unmaintained mode since 2018…
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Following the same process as sourmash-bio/sourmash#2410, we will benchmark the charcoal workflow with [the demo directory](https://github.com/dib-lab/charcoal/tree/latest/demo) and/or the six signatu…