-
https://doi.org/10.1101/125229 (http://biorxiv.org/content/early/2017/04/07/125229)
> Motivation: Reconstructing the full-length expressed transcripts (a.k.a. the transcript assembly problem) from …
-
When running "fast_circ.py denovo" from the latest version of CIRCexplorer2, I encountered the following error:
```
Traceback (most recent call last):
File "/mnt/lustre/shelkmike/Work/Tools/Ana…
-
Hi Alex, and thanks for building and maintaining the best RNA aligner around! :)
I have problems with overlapping paired end reads not being properly aligned across splice junctions, such as in thi…
-
Hi Alex, I'm very new to github so please forgive me if I'm maybe not following the exact protocol for issues and questions.
I've been using STAR for aligning single cell RNA data for several years n…
-
Hi,
I ran into an annoying issue when running Stringtie (version 1.3.4d) using alignments from Hisat2 (version 2.1.0).
This is an IGV screenshot illustrating the problem. The upper panel shows…
-
Hi hista-genotype folks,
Our group is very interested in your software to determine the haplotypes of patient samples.
We sequenced the HLA-A and HLA-B loci.
When we run your software it typical…
-
`/Users/jonatan/Micropeptide_project/psiclass/junc /Users/jonatan/Micropeptide_project/EGAF00001593233.sorted.bam -a > ./splice/psiclass_bam_0.raw_splice
/Users/jonatan/Micropeptide_project/psiclas…
-
Hey,
In some rare cases, I am getting the following error in `de.test.wald()`:
```pytb
Traceback (most recent call last):
File "de.py", line 46, in
test = de.test.wald(
File "/home/…
-
Hello to all
I was wondering if it would be possible for you to help me please. I have installed PASA but I am getting an error on execution. I have collected the error in the attached pdf, see if…
-
I was attempting to perform analyses using `rpvg` on the spliced graph, pantranscriptome, and alignment produced with `vg` however shortly after running `rpvg` it crashed. The minimal files and pipeli…