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Hi,
With 60,000 transcripts in transcripts_to_keep, I am unable to get past the create_data step (I have tested up to 36 hours, with 8 cores and 56 GB ram). For a different dataset with 44,500 tran…
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https://mp.weixin.qq.com/s/i0Due-eMqa8mrSn5izuQXw
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Hello @rob-p and all,
I have a couple questions about the [old](https://combine-lab.github.io/alevin-tutorial/2020/alevin-velocity/) vs [new](https://combine-lab.github.io/alevin-fry-tutorials/2021…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/alexchwong/SpliceWiz
Confirm the following by edi…
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Hello,
I find dynamo a great tool for single-cell analysis tool.
However, I found it hard to install this package because the network of my cluster is bad.
Is there possible provide a docker image …
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Currently the variant peptides with fusion are labeled as `FUSION-:-:`, which causes a problem to `filterFasta`. In `filterFasta` we take a gene expression table, which has the abundance of each trans…
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Hi,
I use StringTie2 to assemble rna from samples in 2 conditions, with 3 replicates in each condition.
I end up with a gtf file like this one for each sample:
![image](https://user-images.github…
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* spladder version: 2.2.1
* Python version: 3.5.2
* Operating System: Ubuntu 14.04
### Description
I've had trouble finding "ground truth" test cases of clear splice alterations that I can tes…
jfass updated
2 years ago
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Hi,
I was wondering if there is a tabular info of the relation between splicing in/out sites and exons of genes. It will be very helpful when the gene is very long. Thanks
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Hi Alex,
Not really an issue, but rather a question - is there a chance to pass 3 fastq files to STARsolo to analyze 2 paired end reads and 1 cellBC+UMI?
Thanks ahead!
Cheers,
G