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Hi @bluenote-1577,
I have downloaded Illumina sequencing data of the ZymoBIOMICS Fecal Reference.
Then, I have performed taxonomic profiling with sylph (database: gtdb_r207, parameters: --estimat…
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Hi I am running into issues where I get about 30% failure rate with the error found in the subject.
These are re-run successfully. I am wondering if you have experience with this type of error?
…
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Hi, I had a couple of questions regarding the pipeline and the generated catalogues:
- I was wondering, if you could guide me through the process of updating a pre-existing catalogue. This is somet…
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Hello,
I want to run Qmatey to classify NGS metagenomic data through the custom database. I have tried many times but failed to run successfully.
I have some files in project directory.
>1. C…
zwh82 updated
10 months ago
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Hello,
I am trying to install the tools for the pipeline, "Taxonomic-Profiling-Diamond-Megan". I have miniconda3 running with version 23.7.2, and I am using Snakemake version 7.32.2. When I am trying…
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@dshorthouse via https://github.com/bio-guoda/preston/issues/47#issuecomment-599835705
> Playing devil's advocate – why do we care about datasets for primary natural history specimen data? Are the…
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### Have you checked the docs?
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules)
### …
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> Due to the scale of the problem, taxonomic profiling remains an 'unresolved problem' in bioinformatics.
> !--# (Moritz): In my opinion, the more important part of the problem that remains unresolve…
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The existing dependency version of diamond (>= 2.0.8) is incompatible with the --fast switch, used in Taxonomic-Profiling_Diamond-Megan release v1.6.0. Switch --fast was implemented in diamond v2.0.10…
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Hello.
Thank you for this amazing tool.
I've have been running into the same error while using `samestr convert`
```
Traceback (most recent call last):
File "/home/nthukus/.conda/envs/sam…