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KP.3.1.4+C27752T(Orf7a:T120I)+C28432T,G28681T(Orf9b:S50L, N:E136D)
GISAID query: C27752T,C28432T,G28681T, C18490T
No. of seqs: 14(USA 1 Ireland 13)
First: EPI_ISL_19195334, 2024-5-31, Ireland
…
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transferred from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1653
![image](https://github.com/user-attachments/assets/d2a20d2c-531c-4dc8-bd3b-9df2b31961bc)
tree: https://nextstr…
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KP.1.1.3+G22021T(S:M153I)
GISAID query: C4999T,G22021T,G24872T
GISAID query for S:C1247S branch: C4999T,G22021T,G24872T,G25302C
No. of seqs: 20(France 1 India 1 UK 1 Canada 1 Sweden 1 Spain 1 US…
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In the newest usher tree the placement is altered and JN.1.39.1 now starts from a weird A16011G node.
[usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice10_genome_t…
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KP.1.1+C21774A,del21653_21655(S:S71Y, S31del)
This is another re-proposal due to inaccurate proposal by DailyCovidCases.
From branch 34 of https://github.com/sars-cov-2-variants/lineage-proposal…
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It seems that there is a new convergent mutation of S:R190S. It usually couples with S:S31del.
Cov-spectrum shows its growth is negative with S:S31S, but large growth advantage with S:S31-. It see…
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LB.1.3+C9163T, A22107G(S:K182R)
GISAID query: C18131T,C9163T,A22107G,-16386
No. of seqs: 7(Netherlands 2 France 3 Israel 1 Belgium 1)
First: EPI_ISL_19205794, 2024-5-28, France
Latest: EPI_ISL…
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**Describe the bug**
This may be a bug in the JSON produced by the UShER web interface, not Galago, but they're not working together yet so let's figure it out.
**Expected behavior / How to repr…
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Besides KP.2.11, there seems to be a direct KP.2+S:L56V branch
KP.2+T21728G(S:L56V)
GISAID query: G17334T, T21728G, G22599C, -6543,-24819
No. of seqs: 25(Australia 1 Canada 2 France 1 India 1 I…
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KP.4+C10969T, A26579G,C23277T(S:T572I)+G174T+G22865T(S:A435S)
2 of the recent French seqs have their Orf10 start codon destroyed.
GISAID query: G22865T,C23277T,G174T
No. of seqs: 7(Canada 1 UK …