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SPBC409.13 | fungal bacterial plant only
SPBC1709.01 | chs2 remove metazoa vertebrates!
SPBC3D6.05 | absent from metazoa
SPAC9E9.08 | rad26 YEAST ONLY (probably conserved, but not yet…
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fission yeast msh2 is fairly well characterised and is involve din a mismatch repair pathway.
Inappropriate annotation transfer includes
cell cycle arrest PANTHER:PTHR11361_AN159
double-strand break …
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I finished annotatting the human orthologs.
This resulted in the removal of "conserved in metazoa/vertebrates" from a number reducing the number conserved in metazoa from 3645 to 3441
(this was mainl…
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Currently:
```
relationship: never_in_taxon NCBITaxon:33090 {id="GOTAX:0000490"} ! Viridiplantae
```
That's it, including inherited. So it's valid to annotate E coli with apoptosis in GO.
I suggest…
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GO:0045498 ! sex comb development
presumably never_in_taxon metazoa is safe?
Reported by: cmungall
Original Ticket: [geneontology/ontology-requests/8107](https://sourceforge.net/p/geneontology/onto…
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GO:0075259 ! spore-bearing organ development
never_in_taxon metazoa is probably safe - maybe we can make astronger rule though?
Reported by: cmungall
Original Ticket: [geneontology/ontology-reques…
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Hello,
The GO editors have recently renamed GO:0006730 to 'one-carbon metabolic process' and clarified the definition. In light of these changes, several mappings to InterPro carbonic anhydrase entri…
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If you go to Stats, the labels for periods on the provided diversity curve shows both the full name of periods and the abbreviated letterlabels for the names of (some of) the periods, overlapping each…
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A new set of missing relationships from OBOL - there
are quite a few so I've divided them into 5 files with
100 missing relationships in each.
Reported by: jl242
Original Ticket: "geneontology/ontol…
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The following resources from the data_source table are difficult to map to MIRIAM resources:
| name | Problem |
| --- | --- |
| EnsemblGenomes | There are multiple databases: Bacteria, Fungi, Metazoa…