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Hello,
I am receiving a subprocess.CalledProcessError after running the following code: DRAM.py annotate -i '/scratch1/flores5/GF_fastq/02_ASSEMBLE/contigs/*.fa' -o annotation
33 fastas found
2…
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Although OpenFold supports MSA generation by MMSeqs2, it appears that BatchFold has no provision to use it. Could you please add support for it?
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Hi,
Thanks for your great program.
I am using foldseek to search some cif files against a database of pdb files. I see foldseek reports the alignment "one amino acid shorter than what it is suppos…
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Would it be possible in future versions to have an option for using either Diamond or MMSeqs2?
 of the genes does not comply with a GeMoMa naming convention:
```
java.l…
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Thanks first.
this is the database setup. So, uniref, pfam and dbcan is ok for use?
DRAM-setup.py prepare_databases --output_dir DRAM_data --threads 28
2021-04-27 21:32:56.852851: Database preparat…
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Hi,
I'm trying to run genomad for the first time! I'm using it on a compute cluster but with shared resources, so trying to control memory and threads.
I've tried several times, each time adjus…
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### Description of the bug
just trying to run colabfold locally using the `assets/samplesheet.csv`
The config file below (`raoul.config`) it is just for setting the GPU and extend the time for s…
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## Expected Behavior
No crash using ` --save-recycles` in colabfold 1.5
## Current Behavior
Crash with colabfold 1.5 when using ` --save-recycles` argument to colabfold_batch (in local
## Step…