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I tried to use different ligands to dock with the proteins in the repo .According to the files in your examples, when I tried to dock with 2br1_protein.pdb and 2wtv_protein.pdb, it worked .But when I …
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this property should conatin `None` *unless* the original node's name has been *renamed* by the KG2 build system (e.g., in UniprotKB where we are inserting the species name as a parenthetic after the …
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nup189-deltaC,SPAC1486.05:allele-4,C-terminal deleted,{6ad90d4a01aee5f2}
nup189-deltaN,SPAC1486.05:allele-3,N-terminal deleted,{6ad90d4a01aee5f2}
nup98-tail(uncleavable),SPAC1486.05:allele-6,Nup98 p…
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Thank you for creating this tool! Helps me a lot.
I noticed I was missing this output file when I ran ViralRecall:
*.fasta: The DNA coding sequence of the predicted proteins from Prodigal
Runn…
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I want to extract euk genes/proteins from metagenomics data. I want to build a gene/protein catalog for euk genes.
Seems that metaeuk is a reference guided approach ( based on mmseq2) and Plass is a …
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We have 78,226 proteins from Pinus taeda and Picea abies which are supposed to link out to http://congenie.org.
It appears this site no longer exists.
Could possibly change link to go to https://…
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when I drag the screen either direction, the bar indicates the proteins goes on for ever in both directions. Can it be set to only go from 1 to the end?
Thanks,
T
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For example: human NCBI:5435.
Searching for the encoding gene via the ENCODES relation returns several ENSEMBL proteins, UniProtKB:P61218, itself, and (oddly) "**:.well-known/genid/NCBIGene5435produ…
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FPbase has a spectra and data for a bunch of proteins that we don't. We could have a script that downloads and converts it for spekcheck. Shouldn't be much work.
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Hi,
Please offer the learned feature.pkl and adj_matrix.pkl.
I have carefully read the readme. However, I am still confused about extracting all the features. As mentioned in readme, how to get…