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**planning**
before new year
- in memory index to speed up Unipept database construction from Uniprot + NCBI Taxonomy
- use new indexing in Unipept database construction scripts
- ship rails platform…
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Hi,
May I know is it suitable to do taxonomy prediction for assembled contigs from megahit in kaiju? Thanks in advance.
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What role does machine learning and deep learning play in your research?
In computational molecular evolution and phylogenetics, sequence simulation represents a fundamental aspect of model develo…
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Thursdays, 12:30-1:20 pm (Pacific)
https://deohs.washington.edu/calendar/environmental-health-seminar
> The Environmental Health Seminar (Env H 580) is a department-sponsored seminar series for s…
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The idea would be to have a specific command for downloading genomes from NCBI
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Hi,
I want to detect if there is any virus in my sample. I have hundreds of virus reference genomes or sequences. Do I have to build hundreds of filters?
I have two other questions. one is the diffe…
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Hi Florian,
I have two separate GTF files - one from GENCODE and another from de novo transcriptome assembly. I prepared indexes for both successfully. When I try to run start.bash script, it seems…
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Hello,
Thanks for all your hard work!
I'm currently working on meta-genome assembly using spades. I know you developed a Metaspades script but for a reason i don't quite understand, I found resu…
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https://www.genome.jp/virushostdb a virus-host database :
from https://www.genome.jp/virushostdb/note.html :
```
Virus-Host DB organizes data about the relationships between viruses and their ho…
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Hey :) I tried to assemble an ssRNA virus genome from Nanopore ~20.000 cDNA reads (710x cov) using the following command:
`canu -p amv -d test_amv_only_l500 genomeSize=30k minReadLength=500 corOutC…