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Hi,
I'd like to view VCFs from the 1000 Genomes Project in IGV (version 2.17.4 with Java included) but a couple of them won't load, with an error message:
"Error loading [URL]: Unable to parse h…
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Hi Eric,
Canvas 1.11.0 crashes at the start of CheckPoint 3 with Value cannot be null.
Parameter name: fileName
I'm really stumped at this one.... Where would I start to figure this one ?
…
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I have unfortunately encountered a CRAM file with an SM field within the @RG lines containing a space. I believe this is valid according to the BAM specification.
When running lumpyexpress on this …
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### Description of bug
Hi,
I am trying to run coronaSPAdes on a sample we are interested in.
Initially I had only Illumina single-end reads available. The original FASTQ was first mapped to SAR…
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I´m trying to normalize my data from an EPIC array.
The SWAN normalization works fine.
When trying the "illumina" method I always get this warning: Incompatible dataset and normalization method: not…
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Add a new workflow to deploy all three test profiles (test_illumina,test_ont,test_bams) on main branch updates.
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Hi,
I ran Genomscope2 an a histogram (create with Illumina data like this: jellyfish count -C -m 21 -s 25556999998 -t 10 -F 3 -o ./Gverna.21mer_counts.jf forward_1.fq reverse_2.fq unpaired.fq && je…
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We're using custom targeted sequencing from a different company than Illumina. They don't provide us with a Nextera manifest formatted file, but I was able to get things to run and get some results b…
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Q1: truncLen parameter in filterAndTrim function is determined by plotQualityProfile. however, I think its objective to see the green line to select the values. is there any standard such as the thres…
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Project: ENCODE
So - we are working with a new High Throughput Sequencing Assay: icSHAPE, that captures RNA secondary structure.
NTR: "icSHAPE"
Editor preferred term: "icSHAPE"
Alternative…