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The recommendation to generate in-silico training data using a single _high-coverage_ normal sample is to split it (option 2 in https://github.com/bioinform/somaticseq/tree/master/somaticseq/utilities…
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`sratoolkit` works natively with AWS/GCP to access `SRA` archive files. Most data is stored in this format and requires `fastq-dump` from `sratoolkit` to start the pipeline. Some modern SRA entries al…
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I would like to discuss here the idea of **Extensions / Plugins** for **MoBi** that would support any custom workflows.
## Power and Flexibility
MoBi is very flexible. You can edit and change any…
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This sounds like a very interesting tool. I'm wondering if this tool can be used to design PCR primers targeting a (single-copy) gene sequence that is specific to my bacterial species of interest but …
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_(I'm creating a new issue instead of commenting under #361 because this affects information in multiple other issues.)_
In #361 the defining mutations for BA.1 and BA.2 are listed as a table. Both…
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In GitLab by @rpmoraga on Jan 4, 2022, 13:15
Hello, congratulations for the publication and the package :smile:
I was wondering that if will be possible to use the package in a scenario to find a d…
tdido updated
2 years ago
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@mtw Hi Michael!
I've randomly come across your repo and it looks like a great resource! Do you think these alignments should be integrated in Rfam? As you know, we have [recently included](https:/…
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Hi Kenji,
Thank you and the team for this fantastic package! We performed _in silico_ gene over-expression in mouse heart scRNA-seq and the result matched well to the real data generated in the lab…
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Variants classified as [known pathogenic variants on MitoMap ](https://www.mitomap.org/foswiki/bin/view/MITOMAP/ConfirmedMutations) are being annotated as "likely benign" in the "MitoTip_interpretatio…
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CMI-PB needs a term for 'in silico'. OBI already has terms for **in vivo design**(http://purl.obolibrary.org/obo/OBI_0001199) and **in vitro design**(http://purl.obolibrary.org/obo/OBI_0001285). I tho…