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Sorry to bother you. The output file '.vregion.annot.tsv' only saved results from one replicon. It's not what you want, isn't it? It seems you made mistake in line517:
`df3 = df2.loc[df2['replicon'] …
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Can I specify the number of copies of an entity in a fasta file the same way it is done in the web interface, or should I duplicate the sequence of the same entity multiple times?
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File ".../miniconda3/envs/etfl/lib/python3.7/site-packages/Bio/SeqUtils/__init__.py", line 402, in molecular_weight
"seq_type=%r contradicts %s from seq alphabet" % (seq_type, tmp_type)
ValueErr…
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Hope it finds you well.
I'm using DIA-NN 1.9 and Skyline (64 bit) 24.1.
I'm trying to use following skyline visualiation function.
_Skyline. To visualise chromatograms/spectra in Skyline, analy…
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Hi author,
Great work! If I am trying to load the released pretrained model, what kind of data can it support? Does it support protein pdb file?
If it doesn't support pdb file, then is it possible t…
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Hello, I want to use a protein 3di sequence to get the MSA file as .a3m format, but i dont know how to do it, could you please give some suggestions? Thanks.
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Creating a binder for this protein: https://alphafold.ebi.ac.uk/entry/Q8W3K0 and I'm getting this error both on T4's and A100's:
This error makes sense, but I'm confused as to how a protein that re…
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Some complex recipes are broken into multiple parts with directions for the sauce, the protein, etc. The scraping needs to maintain these parts.
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Hi,
I have run simulation for Protein-Ligand Complex with frozen protein, and I save my trajectory in .xtc file via:
```python
md_simulation.reporters.append(
app.xtcreporter.XTC…
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decreased protein modification
and
decreased level of ubiquitinated protein in cell (FYPO:0005226)
These are two separate branches.
I see the rationale but it might make sense to have one branch…