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I'm attempting to run the example generate_protein_meshdata.py listed [here](https://github.com/jaredsagendorf/pnabind/tree/master/examples/generate_mesh_data#processing-for-prediction) using a fresh …
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Hello,
First off, great job on this publication. I really enjoyed reading the paper.
I've been trying to run the model myself, however I'm having trouble understanding the structure of the pdb f…
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Hi everyone, I just did a fresh install of DiffDock on my local machine and I encountered this error after trying to run the example inference:
`python -m inference --protein_ligand_csv data/protein_…
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On the protein-protein scenario page with a pdb loaded and chain selected.
I can not select a residue by clicking the 3D surface.
Switching to a non-surface representation of selected residues doe…
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I'm trying to use [HuggingFace's ESMFold](https://huggingface.co/facebook/esmfold_v1) to predict 3D protein structures from the protein sequence. I've got a PDB output that loads just fine on the [RCS…
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Hi there,
Having set up `alphafold` in my machine (NVIDIA GeForce RTX 2080 GPU, ), which I've tested successfully, I'm now coming across the error below running it on a 5586 AA predicted protein (f…
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Maybe my problem hast to do with my lack of understanding of the pep8 standards.
So if I have a list of strings like this:
```
list_of_strings = ["Affy ID", "Agilent ID", "Allergome Code", "longe…
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Hello,
I run bamquery
```python
!python xxx/Software/bamquery/BamQuery/BamQuery.py xxx/Software/bamquery/BamQuery try_1 v38_104 --mode normal --t 8 --plots
```
And my output is as follows,
`…
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### Have you searched the existing bug reports?
No
### What happened?
This affects: brown bear, black bear and polar bear.
If you're supposedly already redeemed a quest from the bears, you would e…
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output_monkey_uniprot_pdbfiles folder is corrupted