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Hello,
Thank you very much for developing so cool tools to estimate the repetitive element expression at locus-specific level.
I am interested in some genomic regions which are not annotated b…
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Hi all,
We are working with a repeat annotation in .gff format that was generated with RepeatMasker, but has since undergone some manual filtering.
The original alignment files have been lost, b…
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Hi dear developers,
I noticed the unusual CPU occupancy rate when using --sensitive 1.
The updated version of RepeatModeler uses 4 threads per parallel job. So maybe there should be a small modific…
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Could FunGAP support mpirun for maker? The maker process is so slower.
``` shell
mpirun -n num_cores maker
```
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Hi!
I am installing dnaPipeTE, following all the steps and including the giri username and subscription. However, I got these errors:
When runnin init.sh:
~~~~
(...)
Saving to: ‘RepBaseRepe…
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Hello,
Thanks for the great method and software! I have been getting this error message when I try to run B2_maf (full output copied at the bottom of this message)
```bash
File "BalLeRMix/softwar…
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Hi!
I am working on generating tensor flow records that can be used for the Enformer model, and am currently validating my work in progress by using the basenji_data.py script with 3 tracks that ar…
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Hello,
Curious if there's a way to integrate additional SINE and LINE information to EDTA final TE library (*TE.lib.fa) file and run the final annotation step to generate the summary (.sum) file show…
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Hi all,
This is a naive question, as I'm not personally a user of EarlGrey, but am interpreting output produced by a collaborator.
What is the meaning of the 'score' column of the GFF output? Is it …
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Hi,
I am hoping to find an annotation table for the updated t2t hs1 human genome. Is this available?
Thank you!