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Hi there,
Thanks for this tool! After several other successful runs, I'm having issue running GenomeScope for a specific sample, it fails to converge. I saw in other issues that this can happen when …
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Hi,
I basically create the yml file using a python parser. I am trying to run exomiser through Docker. All the data dependencies are copied into the docker container. I have set up the application.…
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**Description**
Panel Of Normals (PoNs) are used for identifying somatic short variant events in Illumina short read whole genome sequence data.
The creation of somatic Panel Of Normals (PoN) invo…
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I am not sure, what is going on here. This is the first time I am trying to run hic-pro, so it might be a set-up issue?
I am running:
`/lustre/projects/dazzler/uelze/sw/HiC-Pro/bin/HiC-Pro -i /lus…
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So I'm trying to run clear_quant on a RNA-seq file I obtained online (Ribo-), but I cannot seem to move past the following error:
> ###Parameters:
> Namespace(bowtie1='/home/nilu/Alignment_db/base…
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Hello, I was trying to use Tn-seq doccker version on my dataset and I 'm stuck with the following error
Error:
```
Error in mutate_impl(.data, dots) :
contrasts can be applied only to factors …
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Dear All,
I had read a paper entitled "A pangenome analysis pipeline provides insights into functional gene identification in rice". A very excellent article for pangenome construction in rice, I a…
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I have been asked to review this manuscript for JOSS. https://github.com/openjournals/joss-reviews/issues/6579
The JOSS guidelines require me to consider:
> Whether the software is sufficiently …
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We are now generating novel CoV sequences that are of high quality (complete assembled genomes or near-complete genomes). High quality sequences like Frank (Fr4NK?) and Ginger need to be deposited int…
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**A reproducible template workflow for single-cell DNA methylation data**
DNA methylation is a heritable epigenetic mark that shows a strong correlation with transcriptional activity, and may be de…