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**Is your feature request related to a problem? Please describe.**
It seems like features that are on the border of a protocluster/candidate cluster are not included in the antiSMASH region results
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Hello, I'm trying to calculate CU for ribosomal genes, but it only shows "self".
`milc
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//Amino Acid # : {codon}
// phe=q, leu=w, ser=e, tyr=r, cys=t, trp=y, leu=u, pro=i, his=o, gln=p, arg=a, ile=s, thr=d, asn=f, lys=g, ser=h, arg=j, val=k, ala=l, glu=z, gly=x, stop=stop, met/start=sta…
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Hi,
I have a set of peptide sequence but some of them have missing value such as "AMRE*NSGYSTLT". Is there a way to deal with this to include them in the motif?
Thank you.
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Hi,
Attached is my meta profile plot. I was wondering why the 3'end peak is much larger than the one at the start codon.
This is my first time working with ribo-seq, so I wanted to make sure…
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Could imagine a step which annotated MT with MFAnnot (https://github.com/BFL-lab/Mfannot) and then either used different locus prefix (eg add an M to the locus name), to annotate these.
Generally …
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Dear All,
I was parsing a genbank file (more precisely a gbff file (ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/365/GCF_000009365.1_ASM936v1/GCF_000009365.1_ASM936v1_genomic.gbff.gz)) and du…
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Dear Alexdobin,
I have a question associate with count reads for each gene using STAR. I download cerevisiae genome fasta and gtf files from UCSC. Since I have some interested ncRNA are not in the …
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Hi,
I get an error trying to read gif files using `rtracklayer::import(< gtf file>, format="gtf")`. The same error occurs when I don't specify the format.
```
> library(rtracklayer)
> rtrackla…
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Hi Brian,
There seems to be a bug in how EVM calculates phase for the gff3 output. Here's the problem - one of our users has submitted genome annotations predicted by EVM to us, including both a gf…