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### Description
### Acceptance Criteria
- [x] A view exists that only outputs the minimizer given as a tuple (w,k,s), with w = window size, k = k-mer size and s = shape.
- [x] Rerunning …
rrahn updated
4 years ago
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Hi,
I searched the repository, but I did not really find a solution for my issue.
I start IGV 2.7.2 with the following command:
java --module-path=lib -Xmx4g @igv.args --module=org.igv/org.broa…
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Hi Jeff
I am using your software to analyze some 16S data of ours. More specifically I'm using it to determine the amount of bacteria for which no reference genome was found. For this I work with t…
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When encoding to `json`, `json5` or `yaml` the order of properties in the encoded content is dependent up the order that properties are defined. For machine readability that desn't matter but for huma…
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I'm basically moving tskit-dev/tskit#402 to here. I submitted number #61 to trigger the bug.
The code in #61 gives the output shown below when used with the script that follows after
```
term…
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I'm using ATLAS `2.1.4` on a Linux server (not a cluster) running Ubuntu 18.04.
After running the workaround stated in issue #231, I get a separate `ImportError` in `rule root_tree`:
```
Traceb…
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Full details in: https://github.com/SynBioDex/SEPs/blob/master/sep_025.md
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Greetings,
I would like to be able to run spark reads pipeline from the jar file without the gatk wrapper script. My reason for this is that I already have existing infra for spark jobs that I woul…
ghost updated
5 years ago
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# Brian's To Do
- [x] Read Parsons' PhD Thesis
- [x] Chapter 1
- [x] Chapter 2
- [x] Conclusion
- [ ] Focus on one condition
- [ ] Perform analysis on the one condition
- [x] Pl…
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IGV is a very useful viewer for PacBio long read data, but it could be even better with a few modifications. Ideas to improve support for PacBio data are:
1. **Add a "quick consensus" mode** that onl…