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The article must follow the article editorial guidelines at:
https://github.com/chanzuckerberg/cellxgene-census/blob/main/docs/census_article_guidelines.md
The article should:
- Give a high-…
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### Overview
**Tool**: `Gene expression`
Feature: `heatmap, select cell type, open in gene expression from cell guide`
**Description**: `a few events seem to be firing incorrectly`
### Updates need…
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Note: This is a placeholder epic for Dev to add child issues following an assessment of required changes.
See [**#single-cell-data-wrangling**](https://czi-sci.slack.com/archives/C024HCSH9PT/p169050…
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[snakemake.log](https://github.com/HarariLab/2023_sn_processing_pipeline/files/12478065/snakemake.log)
@Babo03 has an error in the rule "integration_cellxgene"
Might depend on default python versi…
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We can look at this open-source project to easily load in single-cell RNA seq data in batches in pytorch:
https://chanzuckerberg.github.io/cellxgene-census/notebooks/experimental/pytorch.html
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# Design
Discovery experiments and alternatives are summarized in the [slides](https://docs.google.com/presentation/d/1bhQRjqSatROnykNuek1cJv3NBaMWszwzRXTyBTyWHvY/edit#slide=id.p).
1. Deprecate the …
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#618 and #612 incorporated schema changes. Add that information to https://chanzuckerberg.github.io/cellxgene-census/cellxgene_census_docsite_schema.html and make sure to note that different Census da…
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# Design
See [cell_type_ontology_term_id](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/4.0.0/schema.md#cell_type_ontology_term_id).
### cell_type_ontology_term_id
…
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To load any additional layers from Census to an AnnData via `cellxgene_census.get_anndata()`, the method should have an argument `X_layers`
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See these examples:
https://github.com/chanzuckerberg/cellxgene-census/actions/runs/5781109247/job/15665732341
https://github.com/chanzuckerberg/cellxgene-census/actions/runs/5777910151/job/156585…