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Dear @szpiech,
I attempted to compare the iHS results of two datasets (which I processed separated) but found not all variants were included in the iHS outputs, which made the direct comparison diff…
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I didn't see an open thread for the variant yet so here one is. Apologies if this is not how you want to track a developing situation and how it might impact the models. Please let me know and I'll tr…
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By Gabriela Ribeiro, Alex Ranieri Lima, Svetoslav Slavov (Butantan Network for Pandemic Alert of SARS-CoV-2 Variants, São Paulo)
We observed an interesting clustering of the AY.43 lineage which mig…
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Hello there,
I use command to run group based gene association using saige
```
step2_SPAtests.R --vcfFile=../VCF_RSQ80/CHR22_MHAS_rsq80_MAC10.recode.vcf.gz --vcfFileIndex=../VCF_RSQ80/CHR22_MHA…
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Umbrella issue to communicate re development of the [mosquito phasing pipeline](https://github.com/malariagen/pipelines/blob/master/docs/specs/phasing-vector.md). Feel free to raise new issues to deal…
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https://mp.weixin.qq.com/s/yqepdosnpYL45X2MFYWutA
ixxmu updated
2 years ago
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EDITED: Annotation review spreadsheet is here:
https://docs.google.com/spreadsheets/d/1fv8c9WDOxFJ0CILQNjpyCfgjy1yAj09eMCEYgqP4Zy0/edit#gid=0
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from
https://github.com/geneontology/go-on…
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Hi, there
I used this program to get the re-scaled genetic effect of variants considering LD structure a few weeks ago.
In the last time, I used public summary statistics and LD references (from 1KG…
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Hello everybody!
After the meeting today with Professor Harvey and Bert, we have all agreed to continue with our initial plan and read 2 papers each to be presented to each other Journal Club style o…