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![image](https://github.com/sbslee/pypgx/assets/9035751/6fbabd8a-e144-4b3f-a2f0-3ddaace9c81b)
I have more than 100 samples.
When I use the VCFs (generated by Dragen/Illumina) as input it gives sim…
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### Description
This is about an analysis of a Horizon Discovery reference sample, HD803.
The sample was downsampled and analysed for the first time during 2022 and analysed with BALSAMIC version …
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Hi there,
We would like to request some updates to the [acknowledgements](https://virusseq-dataportal.ca/acknowledgements).
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**Alberta:**
_Genomes with…
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Originally reported by: **Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece))**
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Originally from an email to…
reece updated
7 months ago
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Hi I have an issue while trying to make a regional plot with my own LD vcf file, and the variants seem to have been incorrectly plotted in the bottom-left corner:
`mysumstats.plot_mqq(mode="r", build…
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### Description
After the changes to the core pipeline in V13.0.0 a substantial increase in Manta variants has been observed.
This can be read up on a bit more in the "Number of variants" sectio…
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```
0:00:00.000 4M / 4M INFO General (main.cpp : 76) Loading config from /scratch/mygenome__SPAdes3.11.1_noecc_ramdisk/K55/configs/config.info
0:00:…
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**Description**
New possible omicron sub-lineage with DEL 28254 (ORF8:I121-) mutation proposed by the Group of SARS-CoV-2 Genomic Surveillance of the Instituto Nacional de Salud (INS) from Peru.
…
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Hi,
The multi-species nucleotide transformer model appears to be very promising! I'm curious, do you have any plans to pre-train the nucleotide transformer on plant species?
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The half of the episodes in [Data Analysis and Visualization in R](https://datacarpentry.org/genomics-r-intro/), requires "/home/dcuser/r_data/combined_tidy_vcf.csv" file for variants object.
Some pe…