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Given a function such as the one below
```
def get_project_data_obj_by_id(
project_id: str,
data_id: str
) -> ProjectData:
"""
Given a project_id and a data_id, return the dat…
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At https://github.com/Illumina/hap.py/blob/6c907ce3b02956bc239022db6edea7c48d6ddb8b/src/c++/lib/variant/VariantReader.cpp#L735, the size allocated for the array `ad` is `adcount`, whereas in the funct…
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We're using custom targeted sequencing from a different company than Illumina. They don't provide us with a Nextera manifest formatted file, but I was able to get things to run and get some results b…
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### Contact Details
_No response_
### Description of changes
[workbook (13) (1).xlsx](https://github.com/ranchobiosciences/Data_Modeling_Issues_Templates/files/10795061/workbook.13.1.xlsx)
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I have performed validation of the tools using python 2.7.18 with all of the required packages and am happy with how it all works.
With the python 2.x sunsetting having already taken place in 2020 …
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Hi @alexdobin
I used Star aligner for a while and I really appreciate the tool you developed.
Recently, I use to trim the RNAseq short and long reads with the fastp tool https://github.com/OpenGene…
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Dear Author,
When performing genome survey via Illumina pair-end data, it showed that the genome size is 9, 700 or 1,400 Mb. However, when I assembled my Nanopore reads using Nextdenove with genome…
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The option to select Illumina, Nanopore, etc is included on the interface for the assembly service, but is not provided in the CGA service. This came to my intention when a user noted that she was as…
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Hi ndierckx,
I have been trying to use NOVOPlasty to assemble a mitochondrial genome from illumina PE short read data, and despite many runs tweaking all parameters I have only managed to have the pr…
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### Description of bug
Hi,
I am trying to run coronaSPAdes on a sample we are interested in.
Initially I had only Illumina single-end reads available. The original FASTQ was first mapped to SAR…