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Hi,
I am just starting to do some RNA Velocity analysis and it's been working so far, but I have one strange issue and I was wondering if you can see what's wrong.
I am working on the 10x Genomics…
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Hello RGT,
Thanks for developing this amazing package.
I met the error `KeyError: "sequence 'chr22' not present"` when following the full-site test tutorial here (http://www.regulatory-genomics.org/…
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**Analysis of tested guide RNA’s used for gene editing via CRISPR to predict optimal future guide sequences**
Despite the apparent simplicity of this sequence matching strategy to target the CRISPR…
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Hello I'm writting because I'm facing when I run RepeatModeler.
Here is the code I used :
```
Sp_name=Tryphoninae_B
ASSEMBLY=/beegfs/data/these/Genomes/Tryphoninae_B/Tryphoninae_B.fa
c…
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Numbat via docker container was run with the 10X Visium Normal Human Prostate sample data, which failed. The data can be downloaded from 10X [here](https://support.10xgenomics.com/spatial-gene-express…
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```
1) What operating system are you using?
Scientific Linux 6.3
2) What error message was displayed?
*** caught segfault ***
address (nil), cause 'memory not mapped'
3) What was the exact command …
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hi，
I download the vOTU.fna (There are 5251 vOTUs in there.)data in the text and used the MGV pipeline(https://github.com/snayfach/MGV/tree/master/viral_detection_pipeline), like this
````
cond…
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The crash in the proteome comparison tool at the tutorial this week was a result of feature fig|1945512.3.peg.14 not having a translation. That feature derived from the genbank file https://www.ncbi.n…
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- Due to differences in assemblies' quality and completeness. I decide to first start with wgs raw reads in the sra database.
- all Bioprojects with sra records was searched on genebank:
```
(lep…
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this isn't really a bcbio problem but i thought i would give a heads up:
using bcbio 1.9.0 bulk RNA-seq pipeline with BDGP6 genome, salmon crashes because some transcript lengths in the reference fas…