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Hi all
I have a fastq.gz from a nanopore and I'd like to reconstruct a linear synthetic plasmid about 4k long. I have check the fastq.gz and I got a mean read length of 2,240 bp, median of 1,794 bp a…
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**Report ID:**
unavailable: i restarted zotero with debug logging, reproduced the error but the `continue` button on the `better bibtex debug report` screen is not clickable.
**Full Bib(La)T…
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Hi Shujun,
First thank you very much for EDTA!
I have been using EDTA to identify TEs in a set of fungal genomes. I am using a self-made singularity container for this because I am running this…
reslp updated
3 years ago
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Dear SearchGUI developers,
after I updated SearchGUI to version 4.0.29 and PeptideShaker to ver 2.0.21, I got the error message "Overflow detected." right after starting the search (direct in Import…
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Hi,
first of all congratulations on a great tool, the expansion to scRNA-seq analysis is especially appreciated!
I was wondering what the reason for setting an upper limit on the barcode length …
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Hi Sebastian,
How's it going? All good I hope.
I was playing with Arriba on some samples for which we have tumor **and** normal DNA. Part of the question I was trying to answer myself was: how …
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Dear authors,
Currently, the ir_neighbors algorithm consumes over 100G of memory of data from 55k cells, causing memory failures on the server.
Is there any way to limit memory consumption and i…
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Hello, I was wondering if there is a way in ClipseqTools to analyze biological/technical replicates simultaneously? Or do we have to merge all fastq files prior to analysis?
More importantly, I ha…
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This is a cool project and the draft is looking nice.
I have one thing I would add, probably to "Tip 7: Address deep neural networks' increased tendency to overfit the dataset". I'm mentioning it h…
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Hi @dankelley and @richardsc,
### Short summary of problem
I've successfully created a CTD object using `as.ctd()`. Now I would like to add nutrient data that has been measured at distinct water d…