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Hello
I'm trying to perform a fresh install of Cellxgene_VIP.
After downloading the repo from github I enter the cellxgene_VIP directory and type:
```
conda create -n VIP -f VIP.yml
```
I…
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There have been multiple instances where a validated dataset has been uploaded to CELLxGENE Discover and then fails during -`add-labels` with an exception like:
`
ERROR: Writing h5ad was unsuccessful…
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Hi,
I tried to count the total number of available datasets with the following code:
```
ds = sfaira.data.Universe(data_path=datadir, meta_path=metadir, cache_path=cachedir)
len(ds.datasets.ite…
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## `obsm` (Embeddings)
The size of the ndarray stored for a key in `obsm` MUST NOT be zero.
## `obsp`
The size of the ndarray stored for a key in `obsp` MUST NOT be zero.
## `varm`
Th…
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After testing accesses of S3 data in the mirror, s3://cellxgene-census-public, there are no access logs being recorded s3://cellxgene-census-public-logs/.
After triaging, this is probably due to an…
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Using the following dataset:
https://cellxgene.cziscience.com/collections/2b02dff7-e427-4cdc-96fb-c0f354c099aa
Ingest this as a SOMA using `tiledbsoma.io.from_h5ad`. Then outgest using `tiledbsoma…
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Selected tissues should be autoexpanded when a user clicks a share link or clicks Open in Gene Expression from cell guide. We are also seeing intermittent loading errors.
From @dsadgat: Look at neuro…
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Hello,
I downloaded the seurat object from cellxgene but I can't find the normalised counts in scale.data nor assays slot, and I can only find the raw counts. Is it only available in the adata obje…
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For example, I generated this URL: https://cellxgene.cziscience.com/gene-expression?compare=publication&sexes=PATO%3A0000384[…]1L1%2CWNT16&ver=2&cellTypes=B+cell%2CBergmann+glial+cell
And when I open…