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In the current implementation, we are losing the track between an ID (column ID from the VCF) and its file. This is not a problem when the ID has a _rs_ , but in case of containing other internal Ids …
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This is just a note that you may want to consider allowing the primer column to be updated in prep templates with processed data in cases in which the primers are not used in the workflow. This just …
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I want to assess my assembly genomes. So I run the kmc count (ci0) with illumina_reads and assembly genomes and get two kmc database indepedently. Then I use KMC_tools analyze to create a matrix of …
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**Is your feature request related to a problem? Please describe.**
Add WGS background data for goat animals coming from [Berihulay et al. 2019](https://doi.org/10.3389/fgene.2019.01190)
**Describe…
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Hello everyone,
I have Illumina short reads of parents (F0) and offspring (F1), but no Pacbio long read data of F1. but there is existing long-read data from other offspring, could I also use TroCanu…
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Dear LUSH team,
Thank you for creating this much-needed faster implementation for variant calling.
I wanted to validate the accuracy of the vcf generated by LUSH-DNAseq-pipeline using Haplotype…
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**Plan for your class project:**
We recently generated Illumina shotgun sequence data for the non-model plant organism (my study system), Geranium maculatum. I plan to evaluate genome structure with …
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Hi, I am planning to run the complex repeats associated with FAME, kindly help me to create the json file for SAMD12 gene containing the TTTTA and TTTCA repeats. Thanks
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how to completely uninstall masurca?
thank you
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Hello,
I'm experiencing issues using the tool to download the data here:
https://www.ebi.ac.uk/ena/browser/view/PRJEB29403?show=reads
Here is what I ran:
`python3 EBI_SRA_Downloader.py -ebi PR…