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Hi,
Can you clarify how hydrophobicity is defined and the color coding for hydrophobic, hydrophilic, and neutral, respectively
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Beginning with sequence-based searches of the literature via PaperBLAST and using the sequences acquired from PomBase, UniProtKB
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Search What drug may treat Multiple Sclerosis.
https://ui.test.transltr.io/results?l=Multiple%20Sclerosis&i=MONDO:0005301&t=0&q=bf9d0342-0966-4cec-8122-8d87187b1ef3
One of the answer that comes up…
jh111 updated
2 months ago
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When the vector per sequence element is fixed, one letter = one vector, and the vocabulary is limited (i.e amino acids) . Then the cosine similarity can be pre-computed and avoid some computations.
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Dear pVACtools authors,
Thank you so much for the impressive work. We have used the tools in many of our analyses. We are now working on a specific analysis in which we need to decompose the long M…
nttvy updated
3 months ago
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Background: CHEBI has terms for different protonated forms of acids and bases, but does not have grouping classes that conflate over protonation state. Many groups like GO and RHEA use terms in the ph…
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Hi, I'm trying to use DeepRank-Mut. The first problem is that I don't get how to run the tests, because in the documentation it is stated to enter in the test directory and run pytest, but this comman…
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* **GO term ID and label for which you request a new superclass**
* **New superclass (parent) suggested**
~GO:0006568 tryptophan metabolic process~ is OK?
GO:0006549 isoleucine metabolic …
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`multidms==3.0` introduces a much easier interface for fitting collections of models in parallel. @Caleb-Carr and I have put together this issue to serve as an outline/plan for updating the notebooks …
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Thank you for your great work.
When I followed the method in the [previous issue](https://github.com/DeepGraphLearning/GearNet/issues/23) to implement feature extraction for pdb files, I encountered…