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I will start with a simple case: compact de Bruijng graph (cDBG). We can construct a cDBG for GRCh38 and keep chromosome paths (more exactly walks). This is a lossless representation of GRCh38, but wi…
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Hi Brad,
i tried to use your base image and create my own docker image. While doing so I am getting this error. Can you help
[2019-01-20T02:57Z] Calculating coverage: platinum sv_regions
[20…
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Hi,
I am using latest BioMAJ and BioMAJ2 Galaxy versions and Galaxy v18.05.
For example, Anopheles_gambiae.properties looks like:
```
bwa.name=bwa
bwa.desc=Build bwa index
bwa.type=index
bwa.ex…
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@LeeBergstrand
Can you write some short example how to use this library? Is it intended only for your internal use?
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If I understand your code correctly you can parse the long format output of `assign_genome_properties.pl` from the genome properties, but there is no script to infer the genome properties from the out…
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Hello,
I'm having issues running IGV and I'm not sure why. I was previously using IGV_2.3.97 just fine but today I got errors and the program didn't launch. I tried installing both the binary and t…
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when I loaded the project:
git clone --recursive https://github.com/AstraZeneca-NGS/VarDictJava.git
I tried to compile:
./gradlew clean installDist
then there came the error:
==================…
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Link to get to EUtils https://hardwoods.ag.utk.edu/admin/tripal/loaders/eutils_ncbi_import
Link for documentation for EUtils https://tripal-eutils.readthedocs.io/en/latest/introduction.html
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webin cli 1.6.0 doesn't seem to work when behind a proxy even when specifying the https.proxyHost and https.proxyPort properties.
I ran the following:
java -Dhttps.proxyHost= -Dhttps.proxyPort= -jar…