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**Bug Description**
Having a composite type where the parent type's attribute `filed_names!=None` and the child type has properties, in the keys of a `TypeMap`, will cause an error when calling the a…
Sann5 updated
7 months ago
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Since version 1.5, cutadapt accepts a fasta file with multiple adapters by using "file:adapters.fasta" as adapter. This feature, however, cannot be used with trim_galore, as it enforces the adapters t…
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Originally reported by: **Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece))**
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#361 created new tests usin…
reece updated
7 months ago
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I was not able to establish with sufficient evidences which are the donors of this recombinant,
so i let it to a further analysis putatively i establish them as **XBB.2.3.5** or **XBB.2.3.16** and [X…
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Hi
While running vg autoindex I get complaints about the sequence length being too long. I had the same problem when running vg gbwt, so I set the buffer size to 1000.
Could the same parameter b…
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I'm running into a silly problem. My physical map file has repetitive physical positions with unique IDs. The data is sorted based on and then in . Example at the end of the message.
When I try t…
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Command run:
```
medaka_haploid_variant -i fastq -r GCF_008632635.1_ASM863263v1_genomic.fna.gz
```
`GCF_008632635.1_ASM863263v1_genomic.fna.gz` is bgzipped Acinetobacter baumanii reference sequenc…
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https://www.cell.com/cell/fulltext/S0092-8674(19)30511-2#%20
- [ ] [create a issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and …
jjgao updated
8 months ago
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## Need
A reduced number of variants are currently being uploaded to Scout for the Balsamic UMI workflow. Therefore, we need to improve the filtering in order to provide customers with a useful list …
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**Is your feature request related to a problem? Please describe.**
In an inter-laboratory comparison (https://github.com/Clinical-Genomics/External-comparison/issues/22) there were 2 clearly somati…