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Hi,
We really would like to test and use your program, but we encounter some problems with installing it. It seems like the same problem that 2tony2 mentioned. So we tried his suggestion and instal…
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When setting the parameters below, do these need to be included in the dentist.json config file? and if so in which section?
--max-insertion-error
--min-anchor-length
--min-reads-per-pile-up
--m…
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Hi, when I use clair3(v1.0.5) to call variants in HG002's PacBio HiFi 15-20kb chemistry2 reads, I typed the run_clair3.sh command twice in the command line, using the same inputs, but the results of m…
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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
wf-single-cell v2.0.2-ge9dac45
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No …
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Hello everyone,
First of all, thank for reading me. I am a phd student in biology, and I am learning on my side some bio-informatics stuff, without any background.
Since several months, I have …
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I recently tried your workflow, and found mosdepth was crashing due to a dependency issue. I was able to fix it by providing the versions that you have listed on the Structural variation analysis page…
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Small question regarding the models for base-calling.
We ran sequencing at 260 bps and the latest available model appears to be "dna_r10.4.1_e8.2_260bps_sup@v4.1.0". Now, for 400 bps, many more mo…
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Hi,
I was wondering if the RAW data used to train the ONT model on R10.4.1 chemistry is publicly available. The ones on the GIAB FTP server are all R9.4.1. If so, could you point me to where these fi…
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Describe the issue:
Hello, i am trying to recreate the steps done in this post: https://google.github.io/deepvariant/posts/2021-02-08-the-haplotype-channel/
I have a bam file with phasing informatio…
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Hi!
I am ghaving an error that I do not understand from deeplexicon.py. The output is empty.
Could you please let me know what's going on and how to solve this issue?
Thank you!
```
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