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Just noticed a small hypermutated sublineage of KP.1.1.3, hard to think it will go anywhere but worth monitoring if it grows.
KP.1.1.3 >> S:R190S (G22132T) >> S:G75S (G21785A), Orf3a:S74F (C25613T…
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Hey, tracking this discussion here because there's a lot of moving parts. This is very raw, and we'll check things off as we find what we need, and modify the top post based on the changing landscape …
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Hello Pierre,
I was able to run Viral-Track successfully. However, I noticed that if you don't run the transcriptome assembly step `Viral_Track_cell_demultiplexing.R` crashes because the basic GTF …
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Hello, not really sure if this sould be an issue, but please treat it as a feature request.
Could we get a percentage progress of the whole project, not just the job we are currently working at?
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## Current Implementation
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## Suggested Enhancement
Add RSS feed to
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klaas updated
3 years ago
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Just spotted a KP.3 sublineage that has got S:Q52R defining mutation of JE.1.1.1 and much earlier of B.1.525 [see **https://github.com/cov-lineages/pango-designation/issues/4** (!!) ]
Defining muta…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1984
There seems to be an LF.1.1.1 branch that loses Orf1a mutations due to recombinant.
JN.1--LF.1.1.1
Breakpoint between…
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I had recently did a Nanopore sequencing run for SARS-CoV-2 in MinION with midnight primers 1200 bp amplicons (Nikki Freed protocol) and native barcoding kit (EXP-NBD96). I have earlier used EPI2ME pi…
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Which columns should be made accessible in the var dataframe in census?
Right now, census only has a subset of the columns specified in the cellxgene schema. In census, there are:
* `feature_id`…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1995
There is a Orf1a:N470T sub-branch of KS.1.1 that most of the seqs are placed elsewhere by usher. Now that branch has a S:R1…